Sonic the Comic(1993-2002)
UK Based Comic company Fleetway created their own Sonic series. Among the changes were the character of Johnny having a crush on Amy. Amy is a crabby playful girl bruiser who teased Sonic frequently. The Shanazar Arc had the writers Nigel Kitching and Lew Stringer alternate writing duties. Shanazar was revealed to be Mobius in the past. Knuckles is present in the story. The arc also used the redesign of Robotnik as he was transformed into Kintober while on Shanazar. The redesign being close to
Sonic Adventure 2. Lew Stringer introduced Agent X as Johnny. The one shot characters Hobson and Choy also joined the freedom Fighters. The Kintober computer is a father figure to Sonic he fights against. The series continued on for a bit longer than OTL, seeing several planned ideas implemented. This butterflies away the STC-Online Fan Comic as the ideas used there are shown, such as an aquatic race introduced by Richard Elson.
A taste of Fleetway's British Sonic. Still cocky but comes off as a bit more polite(OTL Fleetway Sonic was a total jerkass).
Archie Comics(1992-2016)
Issue 13
Archie Comics Sonic began life as a harmless, largely for children, series, but began to enter more complicated storylines as it went on. However the comic also adapted elements from the then current games, introducing Knuckles in Issue 13. There was even an issue in which Robotnik was the main character titled "A Day in the Life of Robotnik". The comic borrowed heavily from Sonic Sat AM, but came with an unexpected element of Permanent death. When someone died in the Comics. They remained dead. Technically Knuckles, Sally and Dr.Robotnik were among those who met their demise. All three in the storyline
Endgame, the conclusion to the original series. Sally was seemingly killed by Sonic intentionally cutting her rope while on a mission. Sonic was put on trial for the murder.
The true murderer was later revealed to be Metal Sonic, who's more normal looking facade melted away. Knuckles robotocized himself to fight Metal Sonic, leaving him permanently stuck in that robotic state. Finally Eggman was defeated and killed in an explosion Sonic barely managed to outrun. With Eggman defeated, the rest of the series involved restoring the damage done. The Series was rebooted with Sonic, Knuckles was restored to life and an alternate universe version of Eggman entered the world of the Archie Comics, serving to parallel the modern stories.Sonic was also now older to justify his new appearance based upon the more recent games as were characters like Amy thanks to the Time Skip.
Several crossovers with characters like Savage Dragon, Archie's Mario and Megaman series ensued. The Image Crossover featured the villain Dr.Ian Droid, who had previously battled Knuckles in his own series. This was when Ken Penders came onto the scene. Ken enjoyed a great deal of freedom, creating the Source of All, which Penders revealed to be an AI made out of a pool of nanotechnology, from either the past or the future, that was so advanced as to be indistinguishable from magic. Penders was kept restrained in his insanity by Karl Bollers. Bollers wrote the relationship between Antione and Bunnie, with Antione becoming a darker character, which Penders used to reveal that this was the evil Antione from the Comic's previously introduced mirror universe, the previously established spar having been covered with an eyepatch while he had made up a lie about how he got the scar.
Karl had Sonic in a love triangle with Amy and Fiona, the Iron Queen brainwashed Knuckles with her magic to gain control of a giant Master Emerald, Bunnie's real name was revealed to be Scarlette O'Hare, Antoine was manipulated by the Source. Snively donned a robotic battlesuit and called himself Skarkus as a rival to Eggman, who was terrified of Shadow killing him after receiving a vision. Nicole and A.D.A.M. fell in love. Sonic and the former Freedom Fighters became ambassadors to the Overlander society and Station Square. There was also a Girls' Night Out Episode with Mina, Amy, Nic, and Rouge, Bunnie and Antoine getting engaged in issue 175 and marrying in issue 200.
Karl Bollers wrote a story arc where Knuckles and Monkey Khan get brainwashed by the Iron Queen and Eggman respectfully, leading to a three way battle between the Queen, Eggman and Mammoth Mogul over a power source equal to the Master Emerald. Snively switched sides and fought with a powered armor, allying with Shadow as Eggman had a vision Shadow would kill him. Snively also gained the Source of All return, being controlled by Ixis Naugus. Snively would die a hero, which rattled Sonic and his friends considerably.Issue 200 also featured a time jump known as "Mobius: X Years Later" giving a glimpse into the future of the characters. Bunnie even received a three issue series starring her Tails and Knuckles. Penders left the series and was replaced with Ian Flynn. Karl had Sonic date Amy Rose. However, Fiona Fox would end up developing feelings for Sonic and the two would become rivals for his affections.
In Flynn's run, Robotnik was having difficulty with an unknown person referred to as "Anonymous" which was competent at repairing robots and as tall as Robotnik, later revealed to be the original Robotnik. The end of "The Good, the Bad, and the Unknown" arc revealed that Ivan Kintobor, an ancestor of Robotnik and creator of Shadow, had survived as a Human Popsicle and he returned as a major antagonist. Other new antagonists were from the pre established Mirror Universe, including an evil version of Silver named Tarnish.
Penders successor on the book, Ian Flynn, had E-123 Omega kill Tommy Turtle. This led up to the storyline "Endangered Species" which featured a Mêlée à Trois between the Dark Egg Legion, Thrash the Devil and Team Fighters for the fate of the Echidna species. One of the covers had Julie-Su and Amy Rose back to back and the third part having Lien-Da whip binding Sonic. Notably the arc had a happy ending, with the Death Egg II attempting to invade Avalon being defeated. Penders granted Sega permission to use his characters and no problems arose during the
Worlds Collide crossover with Megaman in Issue 250. The crossover featured Eggman and Wily meeting and teaming up, leading to the two heroes battling roboticized versions of the Sonic Cast and some fusions such as Chaos Devil(a fusion of Chaos and Yellow Devil), and Metal Bass, a fusion of Metal Sonic and Bass. The character of Nicole 7000 was introduced shortly after the event due to an AI needed to mantain the level of technology left over from the Megaman universe in Sonic's universe. After the crossover "Shadow Fall", the first storyline involving Team Dark, featured Black Doom and Mephiles as the antagonists.
Cortez
Null
Flynn continued writing up to issue 300, this resulted in the apparent death of Antione in Metal Sonic's explosion, though fan favoritism led to his survival being revealed with the same occurring to Hershey the Cat. Flynn was also tasked with rebooting the Universe as the rights prepared to go to IDW instead of Archie and used this to write a conclusion to
Sonic Underground, which was included in the event
Sonic Universe which crossed over many versions of the character as the series was rebooted to avoid a Ken Penders Lawsuit. Included in the work as well was a retelling of
SegaSonic the Hedgehog and an adaptation of
Sonic Lost World. The 300th Issue introduced the Metal Virus. A replacement for the Roboticizer, the Metal Virus was a Zombie plague spreading across the Sonic Multiverse(inspired by the success of
Afterlife with Archie, another Archie Comics Zombie story). The two non Metal Virus enemies and main antagonists of the event were Cortez and Null. A newly introduced character(due to a mandate to sell toys) was an alternate version of Sonic known as Clear Blue Sonic, which was among the victims of the Metal Virus. The Metal Virus while seemingly destroyed and most of its victims restored to normal with the crossover showing several alternate realities and versions of Sonic from across his history being roboticized. IDW would use the Metal Virus in the comic event
Infestation.